SNP Profiles matching PA 289 [PER]

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 Key

 1234567891011121314
_Input profile
TTCCACGTCTGGAACCGGCCGGGGAACC
1._GC-05-011-1-11
TTCCACGT_GGAACCAACCGGGGAACC
2._RUQ_1059
TTCCACGTCCGGAACCAACCGGGGAACC
3._GC-05-011-1-11
TTCCACGTCCGGAACCAACCGGGGAACC
4._GC-05-011-1-11
TTCCACGTCCGGAACCAACCGGGGAACC
5._PA_121_[PER]
__ACGT__AACCAACC__AA_
6._PA_46_[PER]
__ACGGCC_AA-GGCC__AA_
7._RUQ_1621
TTCCACGGCCGGAACCGGCCGGGGAACC
8._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
9._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
10._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
11._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
12._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
13._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
14._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
15._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
16._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
17._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
18._PA_121_[PER]
__ACGTCC_AACCAACC__AA_
19._PA_121_[PER]
__ACGTCC_AACCAACC__AA_
20._ICS_1
__ACGTCC_AACCAACC__AA_
21._RUQ_1059
__ACGTCC_AACCAACC__AA_
22._PA_121_[PER]
__ACGTCC_AACCAACC__AA_
23._UF_667
__ACGTCT_AACCAGCC__AA_
24._PA_121_[PER]
__ACGTCC_AACCAACC__AA_
25._PA_293_[PER]
__ACGTCC_AACCGGCC__AA_
26._PA_293_[PER]
__ACGTCC_AACCGGCC__AA_
27._PA_121_[PER]
__ACGTCC_AA_AACC__AA_
28._PA_207_[PER]
__ACGTCT_AA-AGCC__AA_
29._RUQ_1092
TTCCACGGCTGGACCCAGCCGGGGAACC
 1516171819202122232425262728
_Input profile
AAAACTGGCGCCTTTTCCGGAGTTAAGG
1._GC-05-011-1-11
AGAACTGGCGCCTTTTCCGGAGTTAAGG
2._RUQ_1059
AGAACTGGCGCCTTTTCCGGAGTTAAGG
3._GC-05-011-1-11
AGAACTGGCGCCTTTTCCGGAGTTAAGG
4._GC-05-011-1-11
AGAACTGGCGCCTTTTCCGGAGTTAAGG
5._PA_121_[PER]
AGAACTGGCGCC_TT_GG___GG
6._PA_46_[PER]
AAAACTGGCGAC_TT_-___GG
7._RUQ_1621
AAACCTGGCGCCTTTTCTGGAGTTAAGG
8._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
9._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
10._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
11._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
12._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
13._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
14._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
15._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
16._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
17._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
18._PA_121_[PER]
AGAACTGGCGCC_TT_GG___GG
19._PA_121_[PER]
AGAACTGGCGCC_TT_GG___GG
20._ICS_1
AGAACTGGCGCC_TT_GG___GG
21._RUQ_1059
AGAACTGGCGCC_TT_GG___GG
22._PA_121_[PER]
AGAACTGGCGCC_TT_GG___GG
23._UF_667
AGAACCGGCGCC_TT_GG___GG
24._PA_121_[PER]
AGAACTGGCGCC_TT_GG___GG
25._PA_293_[PER]
AAAACTGTCGAC_TT_-___GG
26._PA_293_[PER]
AAAACTGTCGAC_TT_-___GG
27._PA_121_[PER]
AGAACTGGCGCC_TT_GG___GG
28._PA_207_[PER]
AAACTTGGCGAC_TT_-___GG
29._RUQ_1092
AAACCTGGCGCCCTTTCCGGAATTAAGG
 2930313233343536373839404142
_Input profile
CCCCAGCCCCGGGGTTTTCCCTCTGGGG
1._GC-05-011-1-11
CCCCAGCCCCGGGGTTTT_CTCTGGGG
2._RUQ_1059
CCCCAGCCCCGGGGTTTTCCCTCTGGGG
3._GC-05-011-1-11
CCCCAGCCCCGGGGTTTT_CTCTGGGG
4._GC-05-011-1-11
CCCCAGCCCCGGGGTTTT_CTCTGGGG
5._PA_121_[PER]
_CCAG_CC___TT__CTGGGG
6._PA_46_[PER]
CCCCAG_CC___TT__CTGGGG
7._RUQ_1621
CCCCAGCCCCGGGGTTTTCCCTCTCCGG
8._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
9._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
10._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
11._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
12._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
13._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
14._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
15._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
16._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
17._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
18._PA_121_[PER]
_CCAG_CC___TT__CTGGGG
19._PA_121_[PER]
_CCAG_CC___TT__CTGGGG
20._ICS_1
_CCAG_CC___TT__CTGGGG
21._RUQ_1059
_CCAG_CC___TT__CTGGGG
22._PA_121_[PER]
_CCAG_CC___TT__CTGGGG
23._UF_667
_CCAG_CC___TT__CTCGGG
24._PA_121_[PER]
_CCAG_CC___TT__CTGGGG
25._PA_293_[PER]
CCCCAG_CC___TT__CTCGGG
26._PA_293_[PER]
CCCCAG_CC___TT__CTCGGG
27._PA_121_[PER]
_CCAG_CC___TT__CTGGGG
28._PA_207_[PER]
CCCCAG_CC___TT__CTGGGG
29._RUQ_1092
CCCCAGCCCCGGGGTTTTCTCCCTGGGG

Input profile: PA_289_[PER] RUQ_952

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_121_[PER] GC-05-011-1-11

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

2._PA_121_[PER] RUQ_1059

95.2 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._PA_121_[PER] GC-05-011-1-11

95.1 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

4._PA_121_[PER] GC-05-011-1-11

95.1 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._PA_121_[PER]

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5111 5 > FP
 Dapeng Zhang, 2016

6._PA_46_[PER]

93.5 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 235
 Dapeng Zhang, 2014

7._PA_299_[PER] RUQ_1621

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

12._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

14._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

15._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

16._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

17._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

18._PA_121_[PER]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5111 1 > FP
 Dapeng Zhang, 2016

19._PA_121_[PER]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5111 3
 Dapeng Zhang, 2016

20._ICS_1

91.7 %
24 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

21._PA_121_[PER] RUQ_1059

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._PA_121_[PER]

91.7 %
24 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P60 102
 Dapeng Zhang, 2016

23._UF_667

91.7 %
24 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 292 I-042
 Dapeng Zhang, 2016

24._PA_121_[PER]

91.7 %
24 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: C0233
 Dapeng Zhang, 2016

25._PA_293_[PER]

91.7 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER C 817
 Dapeng Zhang, 2014

26._PA_293_[PER]

91.7 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 762
 Dapeng Zhang, 2014

27._PA_121_[PER]

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D393
 Dapeng Zhang, 2016

28._PA_207_[PER]

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 731
 Dapeng Zhang, 2014

29._SLA_16 RUQ_1092

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484